Will Rogers My current research interests are in the broad areas of bioinformatics and plant evolutionary/ecological genetics. Will Rogers (left) and I are studying the genetics, evolution, and ecology, of the insect-eating pitcher plants (Sarracenia species). Most of my bioinformatics work is a collaboration with Liming Cai (right) of the Computer Science Department to develop methods of modeling and searching genomes for non-coding RNAs. See our RNA-Informatics web site. Liming Cai

Software Written by or Compiled by Members of the Malmberg Lab.
The programs not written by Russell L. Malmberg or a member of the Malmberg lab are being distributed here with the permissions of the authors. See the disclaimer at the bottom of this page.
Program Link
Info
Zip
Size
OS
CPU
GUI
CL
Program Description
Author / Source
RNApasta
Java
14-Dec-09
6000 kb Java
MS Windows, Linux, MacOS
GUI A utility for collecting statistics from aligned and structurally annotated RNA sequences. Versions are available for compiled for several Java versions, and the source code is available.
Russell L. Malmberg, Timothy I. Shaw
SCFG Structural Entropy
Source
7-Sep-12
550 kb Linux CL Software to calculate RNA structural entropies through stochastic context free grammars.
Original Authors: Yingfeng Wang and Pooya Shareghi, Department of Computer Science; Amir Manzour and Timothy I. Shaw, Institute of Bioinformatics, University of Georgia. Program subsequently modified by Amir Manzour. Copyright (C) 2012 RNA-Informatics@UGA. All Rights Reserved.
Lumberjack
Java
24-Aug-04
900 kb Java
Linux
CL A utility for analyzing the phylogenetic signal in regions of multiple sequence alignments.
Carolyn Lawrence
Trbls 0.6
intel
7-Jul-99
850 kb MS Windows
x86
GUI Blast search accessory program: schedules runs of multiple sequences
Russell L. Malmberg
Peaks 0.9
intel
2-Jun-01
330 kb MS Windows
x86
GUI Displays and integrates data files from HPLC or similiar lab equipment
Russell L. Malmberg
MapMaker, QTL 3.0b
intel
25-Apr-97
490 kb MS Windows
x86
CL Constructs genetic linkage groups and maps QTL loci
Stephen Lincoln, Mark Daly, Eric Lander
Whitehead Page
Molphy 2.2
intel
18-May-96
250 kb MS Windows
x86
CL Phylogenetic analysis programs including ProtML
Jun Adachi, Masami Hasegawa
Molphy site
Disclaimer: NO WARRANTY
This software was created in the course of academic and/or research endeavors and not as a commercial package. Its present version (which may still be in development) is distributed for a nominal fee to cover the cost of distribution and administrative costs, "AS IS, WITH ALL DEFECTS." By using the software, each user agrees to assume all responsibility for any and all such use. The author(s) and University of Georgia are not aware that the software or the use thereof infringe any proprietary right belonging to a third party. However, NO WARRANTY OR REPRESENTATION OF ANY KIND, EXPRESS OR IMPLIED, is made about the software, including without limitation any warranty of title, noninfringement, merchantability, or fitness for a particular purpose, by the author(s) or by University of Georgia.